Hi Ben,

As I understand, you are try to find a solution to have multiple manifest
for on clickonce application, it my undersatnding right? I suggest you may
consider creating two different web folder and put different version of
application and manifest file in it. A Web folder can only contains one
manifest. So we can create two: one for user actaully download and another
for beta test. Once the test is finished, we can copy later version in the
actual deploy web folder.

Sincerely,

Luke Zhang

Microsoft Online Community Support
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